addict==2.4.0
aicsimageio==4.14.0
aiohappyeyeballs==2.6.1
aiohttp==3.11.18
aiosignal==1.3.2
alabaster==0.7.16
anndata==0.11.4
annotated-types==0.7.0
anyio==4.9.0
appnope==0.1.4
argon2-cffi==23.1.0
argon2-cffi-bindings==21.2.0
array-api-compat==1.12.0
arrow==1.3.0
asciitree==0.3.3
asttokens==3.0.0
async-lru==2.0.5
async-timeout==5.0.1
attrs==25.3.0
babel==2.17.0
backports.tarfile==1.2.0
beautifulsoup4==4.13.4
black==25.1.0
bleach==6.2.0
blinker==1.9.0
boto3==1.38.21
botocore==1.38.21
bump2version==1.0.1
bumpversion==0.6.0
cachetools==5.5.2
certifi==2025.4.26
cffi==1.17.1
chardet==5.2.0
charset-normalizer==3.4.2
choreographer==1.1.1
click==8.1.8
cloudpickle==3.1.1
codecov==2.1.13
colorama==0.4.6
comm==0.2.2
ConfigArgParse==1.7
contourpy==1.3.2
coverage==7.8.1
cycler==0.12.1
dash==3.0.4
dask==2025.5.1
debugpy==1.8.14
decorator==5.2.1
defusedxml==0.7.1
Deprecated==1.2.18
distlib==0.3.9
docutils==0.17.1
elementpath==5.0.1
elpigraph-python==0.3.2
exceptiongroup==1.2.2
executing==2.2.0
fasteners==0.19
fastjsonschema==2.21.1
filelock==3.18.0
flake8==7.2.0
flake8-debugger==4.1.2
Flask==3.0.3
fonttools==4.57.0
fqdn==1.5.1
frozenlist==1.6.0
fsspec==2023.6.0
future==1.0.0
fuzzywuzzy==0.18.0
googletrans==4.0.0rc1
graphtools==1.5.3
h11==0.16.0
h2==3.2.0
h5py==3.14.0
hpack==3.0.0
hstspreload==2025.1.1
httpcore==1.0.9
httpx==0.28.1
hyperframe==5.2.0
id==1.5.0
idna==2.10
igraph==0.11.9
-e git+https://github.com/AllenCell/image_classifier_3d.git@1ef6ff994483aaa397f53b20350eaf93623fb5a7#egg=image_classifier_3d
imagecodecs==2025.3.30
imageio==2.37.0
imagesize==1.4.1
importlib_metadata==8.7.0
iniconfig==2.1.0
ipykernel==6.29.5
ipython==8.36.0
ipywidgets==8.1.7
isoduration==20.11.0
itsdangerous==2.2.0
jaraco.classes==3.4.0
jaraco.context==6.0.1
jaraco.functools==4.1.0
jedi==0.19.2
Jinja2==3.1.6
jmespath==1.0.1
joblib==1.5.0
json5==0.12.0
jsonlines==1.2.0
jsonpointer==3.0.0
jsonschema==4.23.0
jsonschema-specifications==2025.4.1
jupyter-events==0.12.0
jupyter-lsp==2.2.5
jupyter_client==8.6.3
jupyter_core==5.7.2
jupyter_server==2.15.0
jupyter_server_terminals==0.5.3
jupyterlab==4.4.2
jupyterlab_pygments==0.3.0
jupyterlab_server==2.27.3
jupyterlab_widgets==3.0.15
kaleido==1.1.0
keyring==25.6.0
kiwisolver==1.4.8
lazy_loader==0.4
Levenshtein==0.27.1
lightning-utilities==0.14.3
llvmlite==0.44.0
locket==1.0.0
logistro==1.1.0
lxml==4.9.4
m2r==0.3.1
markdown-it-py==3.0.0
MarkupSafe==3.0.2
matplotlib==3.10.1
matplotlib-inline==0.1.7
mccabe==0.7.0
mdurl==0.1.2
mistune==3.1.3
more-itertools==10.7.0
mpmath==1.3.0
multidict==6.4.4
mypy_extensions==1.1.0
narwhals==1.38.0
natsort==8.4.0
nbclient==0.10.2
nbconvert==7.16.6
nbformat==5.10.4
nest-asyncio==1.6.0
networkx==3.4.2
nh3==0.2.21
notebook==7.4.2
notebook_shim==0.2.4
numba==0.61.2
numcodecs==0.13.1
numpy==1.26.4
ome-types==0.6.1
ome-zarr==0.11.1
open3d==0.19.0
orjson==3.11.3
overrides==7.7.0
packaging==25.0
pandas==2.0.3
pandocfilters==1.5.1
parso==0.8.4
partd==1.4.2
pathspec==0.12.1
pcurvepy2==0.1.5
pexpect==4.9.0
phate==1.0.11
pillow==11.2.1
platformdirs==4.3.7
plotly==6.0.1
pluggy==1.6.0
prometheus_client==0.21.1
prompt_toolkit==3.0.51
propcache==0.3.1
psutil==7.0.0
ptyprocess==0.7.0
pure_eval==0.2.3
pyarrow==21.0.0
pycodestyle==2.13.0
pycparser==2.22
pydantic==2.11.4
pydantic-extra-types==2.10.4
pydantic_core==2.33.2
pyflakes==3.3.2
Pygments==2.19.1
PyGSP==0.5.1
pynndescent==0.5.13
pyparsing==3.2.3
pyproject-api==1.9.1
pyquaternion==0.9.9
pyslingshot @ git+https://github.com/mossjacob/pyslingshot.git@d86bf7578a6f45ecd7c544acf7c2e7bc405123cd
pytest==8.3.5
pytest-cov==6.1.1
pytest-raises==0.11
pytest-runner==6.0.1
pytest-timeout==2.4.0
python-dateutil==2.9.0.post0
python-igraph==0.11.9
python-json-logger==3.3.0
python-Levenshtein==0.27.1
pytorch-lightning==2.5.1.post0
pytz==2025.2
PyYAML==6.0.2
pyzmq==26.4.0
quilt3==6.3.1
RapidFuzz==3.13.0
readme_renderer==43.0
referencing==0.36.2
requests==2.32.3
requests-futures==1.0.0
requests-toolbelt==1.0.0
resource-backed-dask-array==0.1.0
retrying==1.3.4
rfc3339-validator==0.1.4
rfc3986==1.5.0
rfc3986-validator==0.1.1
rich==14.0.0
rpds-py==0.24.0
s-gd2==1.8.1
s3fs==0.4.2
s3transfer==0.12.0
scikit-image==0.25.2
scikit-learn==1.6.1
scipy==1.15.2
scprep==1.2.3
seaborn==0.13.2
Send2Trash==1.8.3
shapely==2.1.1
simplejson==3.20.1
simpleppt==1.1.4
six==1.17.0
sniffio==1.3.1
snowballstemmer==3.0.1
soupsieve==2.7
Sphinx==2.4.5
sphinx-rtd-theme==1.3.0
sphinxcontrib-applehelp==2.0.0
sphinxcontrib-devhelp==2.0.0
sphinxcontrib-htmlhelp==2.1.0
sphinxcontrib-jquery==4.1
sphinxcontrib-jsmath==1.0.1
sphinxcontrib-qthelp==2.0.0
sphinxcontrib-serializinghtml==2.0.0
stack-data==0.6.3
sympy==1.14.0
tasklogger==1.2.0
tdqm==0.0.1
tenacity==9.1.2
terminado==0.18.1
texttable==1.7.0
threadpoolctl==3.6.0
tifffile==2023.2.28
tinycss2==1.4.0
tomli==2.2.1
toolz==1.0.0
torch==2.7.0
torchmetrics==1.7.1
torchvision==0.22.0
tornado==6.4.2
tox==4.26.0
tqdm==4.67.1
traitlets==5.14.3
twine==6.1.0
types-python-dateutil==2.9.0.20241206
typing-inspection==0.4.1
typing_extensions==4.13.2
tzdata==2025.2
umap==0.1.1
umap-learn==0.5.7
Unidecode==1.4.0
uri-template==1.3.0
urllib3==2.4.0
virtualenv==20.31.2
wcwidth==0.2.13
webcolors==24.11.1
webencodings==0.5.1
websocket-client==1.8.0
Werkzeug==3.0.6
widgetsnbextension==4.0.14
wrapt==1.17.2
xarray==2025.4.0
xgboost==3.0.0
xmlschema==4.0.1
xsdata==24.3.1
yarl==1.20.0
zarr==2.15.0
zipp==3.21.0
